Yes, you can do that. Make a header on your target board with VCC, GND, SBWTCK, and SBWTDIO. On the Launchpad, pull off the jumpers that connect the FET side to the Target side (across the dotted line -- I can't give you the J-number since I don't have one in front of me) and jumper the FET side pins to your target board. I use the F5529 Launchpad as a programmer all the time. It works great, it's cheap, and the programmable "eZFET" is good for the future.
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